rs30580685 SNP Detail

Summary

• ID
  rs30580685
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47888283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA CACTTTAATA TCACAAAGGA
  W
  ACCCAGTATA TAATCCTTTC TTGAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39199973	mCV23875050	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss139408823	ENSMUSSNP787413	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss324597848	CHEV_14_48270501	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30580685					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47888283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6388	CpG island 6388	667 bp distal
Ktn1	kinectin 1	within coordinates
Rr297095	regulatory region 297095	82 bp distal
Tssr125323	transcription start site region 125323	1706 bp downstream
Tssr125324	transcription start site region 125324	1437 bp downstream
Tssr125325	transcription start site region 125325	437 bp downstream
Tssr128337	transcription start site region 128337	1562 bp upstream