rs30581676 SNP Detail

Summary

• ID
  rs30581676
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3035910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGTGATTTTC AGTTTTCTTG CCATATTCCA GGTCCTACAG TGTGCATTTC TCATTTTTCC
  CTTTTTTCAG TGTTTTCGTC ATTTTTCAAG TGGTCAAGTG GATGTTTCTC ATTTTCCATG
  ATTTTCATTT TTTTTGCCAT ATTCCATGTC CTACAGTAGA CATTTCTAAA TTTTCCACTT
  TTTTCAGTTT TCCTCGCCAT ATTTCATGTC CTAAATTGTG TATTTCTCAT TTTCCTTGAT
  TTTCAGTTTT CCTGCCATAT TCCAGGTCCT ACAGTGTGCA TTTCTCATTT TTCATGTTTT
  K
  CAGTGATTTC ATCATTTTTC AAGTCGTCAA GTGGAAGTTT CTCATTTCCA TGATTTTCAG
  TTTTCTTGCC ATATTCCATG TACTGTAGTG GACATTTCGA ATTTTCCATC TTTTTCAGTT
  TTTCTCGCCA TATTTCACGT CCTAAAGTGT GTATTTCTCA TTTTCCGTAA TTTTTCAGTT
  TTCTCGCCAT ATTACAGGTC CTACAGGGTG CATTTCTCAT TTTTCATGTT TTTCAGTGAT
  TTCATCATTT TTCAAGTCGT CAAGTGGATG TTTCTAATTT TCCATGATTT TCAGTTTTCT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss46424388	mCV25198671	ABI	CRAMUS_MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30581676					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3035910 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	within coordinates
Rr673613	regulatory region 673613	1820 bp distal
Rr673614	regulatory region 673614	960 bp distal
Rr673615	regulatory region 673615	300 bp distal
Rr673616	regulatory region 673616	751 bp proximal
Rr673617	regulatory region 673617	1551 bp proximal
Tssr83597	transcription start site region 83597	1701 bp downstream
Tssr83598	transcription start site region 83598	173 bp downstream
Tssr83599	transcription start site region 83599	7 bp downstream
Tssr83600	transcription start site region 83600	160 bp upstream
Tssr83601	transcription start site region 83601	405 bp upstream
Tssr83602	transcription start site region 83602	446 bp upstream
Tssr83603	transcription start site region 83603	488 bp upstream
Tssr83604	transcription start site region 83604	1420 bp upstream
Tssr88025	transcription start site region 88025	2 bp downstream
Tssr88026	transcription start site region 88026	183 bp downstream
Tssr88027	transcription start site region 88027	437 bp downstream
Tssr88028	transcription start site region 88028	476 bp downstream