rs30583055 SNP Detail

Summary

• ID
  rs30583055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14650473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGA GTCCTGCTTT TTTCCTCCCG
  Y
  CTTGGGTGAG AGAATTAAGA CCTCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49148872	NES12443754	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T	C	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30583055					SNP	T	C	C	C	C	C	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49148872	NES12443754	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14650473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6153	CpG island 6153	239 bp proximal
Flnb	filamin, beta	within coordinates
Rr287260	regulatory region 287260	1528 bp proximal
Rr296824	regulatory region 296824	within coordinates
Rr404014	regulatory region 404014	1293 bp upstream
Tssr124212	transcription start site region 124212	1306 bp downstream
Tssr124213	transcription start site region 124213	1282 bp downstream
Tssr124214	transcription start site region 124214	1236 bp downstream