rs30583691 SNP Detail

Summary

• ID
  rs30583691
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117497338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGA ATGGGTCCGG GAGGAGGTTT
  Y
  TGGGAATGGC GCACCTATGC AGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46423674	mCV24800499	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss138889676	ENSMUSSNP2274924	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss324202006	CHEV_12_118772191	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30583691					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117497338 () rs orientation: forward

Symbol	Name	Function Class
2900082C11Rik	RIKEN cDNA 2900082C11 gene	1425 bp downstream
Cpgi5227	CpG island 5227	within coordinates
Gm60307	predicted gene, 60307	1346 bp upstream
Rapgef5	Rap guanine nucleotide exchange factor (GEF) 5	within coordinates
Rr474129	regulatory region 474129	within coordinates
Rr474130	regulatory region 474130	211 bp proximal
Rr474131	regulatory region 474131	970 bp proximal
Tssr115537	transcription start site region 115537	139 bp upstream
Tssr115538	transcription start site region 115538	202 bp upstream
Tssr115539	transcription start site region 115539	228 bp upstream