rs30584400 SNP Detail

Summary

• ID
  rs30584400
• Variation Type
  SNP
• Alleles
  A/C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050502 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TTTCCGTGAT TTTCAGTTTT CTCAACATAT TCCAGGTCCT ACAGTTTGCA TTTCTCATTT
  TTCTCGTTTT TCAGTGATTT CGTCATTTTT CAAGTCGTCA AGTGGATGTT TCTCATTTTC
  CATGATTTTC AGTTTTCTTG CCATATTCCA TGTCCTACAG TGGATATTTC TAAATTTTCC
  ACCTTTTTCA GTTTTCCTCT CCATATTTCA CGTCCTAAAA TGTGTATTTC TCATTTTCAG
  TGATTTTCAG TTTCCTCGCC ATATTCCCGG TCCTACAGTG TGCATTTCTC ACTTTCCACG
  N
  TTTTCAGTGA TTTCGTCATT TTTCAAGTCG TCAAGTTGAT GTTTCTCATT TTCCATGATT
  TTCAGTTTTC TTGCCATATT CCATGTCCTA CAGTGGATAT TTCTAAATTT TCCACCTTTT
  TCAGTTTTCC TCTCCATATT TCACGTCCTA AAATGTGTAT TTCTCATTTT CAGTGATTTT
  CAGTTTTCTC GCCATATTCC AGGTCCTACA TTGTGCATTT CTCACTTTCC ACGTTTTTCA
  GTGATTTCGT CATTTTTCAA GTCGTCAAGT TGATGTTTCT CATTTTCCAT GATTTTCAGT
                                                                   
  
  N = A/C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss46423767	mCV25367574	ABI	CRAMUS_MOUSE	f	SNP		A		T
ss46431980	mCV25386165	ABI	CRAMUS_MOUSE	r	SNP		A	T
ss46451286	mCV22773978	ABI	CRAMUS_MOUSE	f	SNP	T		G
ss46458846	mCV25363048	ABI	CRAMUS_MOUSE	r	SNP		G		A
ss46459444	mCV22800532	ABI	CRAMUS_MOUSE	f	SNP		T		A
ss46459485	mCV22865023	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss46465192	mCV22822745	ABI	CRAMUS_MOUSE	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs30584400					SNP	?	T	?	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050502 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1824 bp downstream
Tssr4285	transcription start site region 4285	1799 bp upstream
Tssr4286	transcription start site region 4286	1695 bp downstream
Tssr4287	transcription start site region 4287	1660 bp upstream
Tssr4288	transcription start site region 4288	1632 bp downstream
Tssr4289	transcription start site region 4289	1537 bp upstream
Tssr4290	transcription start site region 4290	1530 bp downstream
Tssr4291	transcription start site region 4291	1450 bp upstream
Tssr4292	transcription start site region 4292	1414 bp downstream
Tssr4293	transcription start site region 4293	1379 bp upstream
Tssr4294	transcription start site region 4294	1377 bp downstream
Tssr4295	transcription start site region 4295	1304 bp upstream
Tssr4296	transcription start site region 4296	1341 bp downstream
Tssr4297	transcription start site region 4297	1277 bp upstream
Tssr4298	transcription start site region 4298	1259 bp downstream
Tssr4299	transcription start site region 4299	1219 bp downstream
Tssr4300	transcription start site region 4300	1181 bp downstream
Tssr4301	transcription start site region 4301	1163 bp upstream
Tssr4302	transcription start site region 4302	1151 bp upstream
Tssr4303	transcription start site region 4303	1096 bp downstream
Tssr4304	transcription start site region 4304	1067 bp upstream
Tssr4305	transcription start site region 4305	998 bp downstream
Tssr4306	transcription start site region 4306	979 bp upstream
Tssr4307	transcription start site region 4307	958 bp downstream
Tssr4308	transcription start site region 4308	926 bp upstream
Tssr4309	transcription start site region 4309	882 bp upstream
Tssr4310	transcription start site region 4310	835 bp downstream
Tssr4311	transcription start site region 4311	807 bp upstream
Tssr4312	transcription start site region 4312	727 bp downstream
Tssr4313	transcription start site region 4313	668 bp upstream
Tssr4314	transcription start site region 4314	656 bp downstream
Tssr4315	transcription start site region 4315	632 bp downstream
Tssr4316	transcription start site region 4316	605 bp upstream
Tssr4317	transcription start site region 4317	529 bp downstream
Tssr4318	transcription start site region 4318	505 bp upstream
Tssr4319	transcription start site region 4319	448 bp upstream
Tssr4320	transcription start site region 4320	384 bp downstream
Tssr4321	transcription start site region 4321	356 bp upstream
Tssr4322	transcription start site region 4322	257 bp downstream
Tssr4323	transcription start site region 4323	222 bp upstream
Tssr4324	transcription start site region 4324	192 bp downstream
Tssr4325	transcription start site region 4325	141 bp downstream
Tssr4326	transcription start site region 4326	103 bp upstream
Tssr4327	transcription start site region 4327	100 bp downstream
Tssr4328	transcription start site region 4328	18 bp downstream
Tssr4329	transcription start site region 4329	20 bp upstream
Tssr4330	transcription start site region 4330	83 bp upstream
Tssr4331	transcription start site region 4331	107 bp downstream
Tssr4332	transcription start site region 4332	213 bp downstream
Tssr4333	transcription start site region 4333	225 bp upstream
Tssr4334	transcription start site region 4334	247 bp downstream
Tssr4335	transcription start site region 4335	394 bp downstream
Tssr4336	transcription start site region 4336	398 bp upstream
Tssr4337	transcription start site region 4337	471 bp downstream