rs30584780 SNP Detail

Summary

• ID
  rs30584780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127075883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGTCAA ATACTGCATC
  TTCAGTTACT TTTGACCCAT TTCCATCCTT TAGTCTGGGA ACTAGAGAGG GCTACAATCT
  GAATGATCTA CTTAGAAAGT GTTATAAACC CACATAGGCT GGAATTCTCA GCCCTATCCT
  TTCTTCCTCC CACTGACTTC TTAGACCCTT GCTTCCATCT CAGAATCTAC ACAGTGGAGA
  Y
  TGAGCAGAAC ATGGGTTGAC AAACCTGCAT AAGTAGAACT CGAATCAGCC GTCATTAAGT
  ATAATCTCCC GTAAGAGATC CACATGGTCA CCAGGAGATC AGAAGTCAGA GGAGGCTGCC
  TGATCCACAC TCTTGGTGTG GAAACAGCAA AGCGCTTCCC TGTTCTGTTT AAGCCCCAGT
  TGTTGAGACT GTGCCCAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46963880	NES10886666	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	T	T		C	T	C		T
ss135859272	ENSMUSSNP6838278	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				T
ss320952622	CHEV_3_126985152	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30584780					SNP	C	C	C	T	C	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46963880	NES10886666	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127075883 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42971	predicted gene 42971	1247 bp downstream
Rr65492	regulatory region 65492	1483 bp distal
Tssr35567	transcription start site region 35567	112 bp downstream
Tssr35568	transcription start site region 35568	133 bp downstream
Tssr35569	transcription start site region 35569	164 bp downstream
Tssr35570	transcription start site region 35570	211 bp downstream