rs30585676 SNP Detail

Summary

• ID
  rs30585676
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127077998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGTGAG ACTGTGTGCC
  AGAGTCCTGT AGTGTGCCAC AGGACACATC AAGTGAATAG CAGACTTAGA AGACTGAATG
  CAACACAGTC TTCTCCATAA GCAACATTCA CTCAAAACTG TGATGCCTAC CCCACTAACT
  AGAGCACTCC TTATTCTTCA AGTGATTTTT TTTTCATTTG ATATTTCAAA AATCTGAAAT
  K
  CGGGTAATGT GCAGCTGTGA AATTCCTCCA AAGCAAGCAA TCTGATGATG TCTTCCATAA
  AAACGTCTCC AGCAAGCCAC TTGCCATCCA TCACGTGGAA TGAAGGGCAC CTGAGATGTG
  CGAACGGCTC TCTGAATGGA ACCAACAAGA GAATGCTTCC CCAGAGTCAA GTCACTTCTG
  AGCATCTTGT CCCTCAACTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45544978	mCV24304485	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G	G
ss46963890	NES10886597	PERLEGEN	MM_PANEL2	f	SNP							G	T		G
ss135859308	ENSMUSSNP4330994	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		G
ss320952637	CHEV_3_126987267	CHEVERUD	SCREENING_POP	f	SNP						G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30585676					SNP	T	T	T	G	G	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46963890	NES10886597	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127077998 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42971	predicted gene 42971	within coordinates
Rr74269	regulatory region 74269	1378 bp proximal
Tssr35567	transcription start site region 35567	1994 bp upstream
Tssr35568	transcription start site region 35568	1965 bp upstream
Tssr35569	transcription start site region 35569	1948 bp upstream
Tssr35570	transcription start site region 35570	1874 bp upstream