rs30585678 SNP Detail

Summary

• ID
  rs30585678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127078049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAATAGC AGACTTAGAA
  GACTGAATGC AACACAGTCT TCTCCATAAG CAACATTCAC TCAAAACTGT GATGCCTACC
  CCACTAACTA GAGCACTCCT TATTCTTCAA GTGATTTTTT TTTCATTTGA TATTTCAAAA
  ATCTGAAATG CGGGTAATGT GCAGCTGTGA AATTCCTCCA AAGCAAGCAA TCTGATGATG
  Y
  CTTCCATAAA AACGTCTCCA GCAAGCCACT TGCCATCCAT CACGTGGAAT GAAGGGCACC
  TGAGATGTGC GAACGGCTCT CTGAATGGAA CCAACAAGAG AATGCTTCCC CAGAGTCAAG
  TCACTTCTGA GCATCTTGTC CCTCAACTAA GATCCCCGAC TTGGGAAACT TGAAGGAAAA
  GTCTCTGTTT GCTGCCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45564541	mCV24304474	ABI	CRAMUS_MOUSE	f	SNP		C	T	T
ss46963892	NES10886598	PERLEGEN	MM_PANEL2	f	SNP						C	C		T
ss135859314	ENSMUSSNP2864993	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss320952639	CHEV_3_126987318	CHEVERUD	SCREENING_POP	f	SNP					T			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30585678					SNP	C	C	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46963892	NES10886598	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127078049 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42971	predicted gene 42971	within coordinates
Rr74269	regulatory region 74269	1327 bp proximal
Tssr35569	transcription start site region 35569	1999 bp upstream
Tssr35570	transcription start site region 35570	1925 bp upstream