rs30586895 SNP Detail

Summary

• ID
  rs30586895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127078443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATTTTGT GCACTGCAAA
  ATTGACCAGT TTCCTAACTA TGTGTGTTGG GGGTAAAAAG GCTTTGTAGA AACTACTATT
  TCAAGCACTT TGGGTTCTGT ACATTTCTGT TTTTACAAAT GAATGTTGTG TGTCTTAAAT
  CCTCAAATGC ACTTAAACTC TATATACAGA CATGACGTAC CCCACCACAA CAACTGACTG
  Y
  AAGGAGAGCC CACATTTTCC TACATGTCGC ATTCATTCAG CTCAGTTATT CAGAGAAGGT
  AAGGAAGTTG GGCAGATGTC TCACGAATCT TGACCCCTTC TGATCCTGTC ATCCTGGACC
  AGAGGGCAGA GCCTCTTGCC TCTGGGCTTC TCTCTGACTT TCAGTGGAAT CGCTGTGGTG
  CTTGACCTGA TGGTCTACGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46963900	NES10886602	PERLEGEN	MM_PANEL2	f	SNP	C		T	C		T
ss320952645	CHEV_3_126987712	CHEVERUD	SCREENING_POP	f	SNP		T			C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30586895					SNP	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46963900	NES10886602	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127078443 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42971	predicted gene 42971	within coordinates
Rr74269	regulatory region 74269	933 bp proximal