rs30590054 SNP Detail

Summary

• ID
  rs30590054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14007233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTGTCTTG TTCAGCTGAG AGGACAGCAA CTGTGTAAGC
  CCAACAGTGT GCCAAGGGAG CTGGGCAGGA CTATGTCAGG GCTGGAACGA TCAGGGAGGA
  Y
  CATGTAAGAA ATGGAGAGTG GACAAAGTGA CTCAGATGCG CTACTAAAGA AGGATGTGAG
  GATGGCAAAG GCTCAACATA CTGTTCTGGG GAGAAGTTAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49151730	NES12475767	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30590054					SNP	T	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49151730	NES12475767	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14007233 () rs orientation: forward

Symbol	Name	Function Class
Cfap20dc	CFAP20 domain containing	within coordinates
Gm46492	predicted gene, 46492	1553 bp upstream
Rr287211	regulatory region 287211	1568 bp proximal
Rr294530	regulatory region 294530	427 bp distal
Rr298207	regulatory region 298207	1819 bp distal
Rr298208	regulatory region 298208	1416 bp proximal
Rr389289	regulatory region 389289	1808 bp upstream