rs30590059 SNP Detail

Summary

• ID
  rs30590059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14008504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGACTT CTGACGTTAA
  TGGGGGTACC TGTGTATATA TAGCTAAATT AGCAGGAAAT TCCTCTGGGC ACTGGTGACT
  AATGGCAACT GTTTCAGGTG CTGCTTTAGA TAAAGAAAAA GCCAAGATCT TGTTTTGTAG
  CTCAACTGCT TTCACTTAAA CATAATCGTC ATAGCAGTTC TAAGGGGTGG AATGGACATT
  Y
  AACCTCTAGA TGTGACTTGG ATGCGCACCT CTCTGTGCCT TTTATTGGAT ATGTATGAAG
  AAGTGTTATC TCTGGATAAA AAGCCATGAT ATGTTTAGCT CGTATGAAAC AGTTTTCCAA
  AGCAGTTAGA TGAACGTATA TCCCCGGGCA GTACATCGTA ATTGTCGTCA GTGCCCTCCA
  GCAGTGCATT CACACCCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49151735	NES12475904	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30590059					SNP	T	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49151735	NES12475904	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14008504 () rs orientation: forward

Symbol	Name	Function Class
Cfap20dc	CFAP20 domain containing	within coordinates
Rr287211	regulatory region 287211	297 bp proximal
Rr294530	regulatory region 294530	1698 bp distal
Rr298208	regulatory region 298208	145 bp proximal
Rr300930	regulatory region 300930	1937 bp proximal
Rr389289	regulatory region 389289	537 bp upstream