rs30590060 SNP Detail

Summary

• ID
  rs30590060
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14008787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGAGGCCC TTATGCTGCT TGGGTCTGCA GATCAACTAC
  AGTGTACAAT GAGAAGGCGA AGCTTATTGA CAGTGCAGGT GGAGCTCTGT CAGCAATGGG
  W
  GACACACCGA ATAACTGGGA ATAAAGGCTC GCAGAGCAAC AGAGCAGGGA GGATGAGCCC
  CAGGGGTTCC ATGGGAAAGT TAGGAAGGAC TTCTGACGTT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49151737	NES12475902	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30590060					SNP	A	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49151737	NES12475902	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14008787 () rs orientation: forward

Symbol	Name	Function Class
Cfap20dc	CFAP20 domain containing	within coordinates
Rr287211	regulatory region 287211	14 bp proximal
Rr294530	regulatory region 294530	1981 bp distal
Rr298208	regulatory region 298208	within coordinates
Rr300930	regulatory region 300930	1654 bp proximal
Rr389289	regulatory region 389289	254 bp upstream