rs30590187 SNP Detail

Summary

• ID
  rs30590187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:66433115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGACATGC AGTCATGAAA
  AAATGAATCG TCAAAAACAG TCTATTTCTG GGGAAAACCT AACACAAAAG AAGAACATGA
  CGACTGCAGC TGCATCATCA GAATGCTCCA ATGAGGACCA AGACATCAAA TGTGCAGTGG
  CTGGGTAAAG ATAGTCTGTA CAAATACAGC GTTCCTTTCC TGTTTCTTTG GCAACAAATT
  Y
  AAATTCTCAG GCAAAACCAC ACCTCCATGG AAGATAAGTT GAGATAAGGT AAGTCCATAC
  AAAACCAACC ATCTATAGCC CTCTTATCAC TCATTATTGC CCATCTTCTA TAGCAGACCT
  AACAGTCTTT GTATAATCTT GTTTAGAATA TATTATTTTT AGAGTCATTT TATTTTATTG
  GGGGGGGGGG GAACAGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47962308	NES11923223	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30590187					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47962308	NES11923223	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:66433115 () rs orientation: forward

Symbol	Name	Function Class
2610300M13Rik	RIKEN cDNA 2610300M13 gene	within coordinates
Rr150144	regulatory region 150144	1287 bp proximal
Rr379514	regulatory region 379514	1464 bp upstream