rs30591128 SNP Detail

Summary

• ID
  rs30591128
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14010834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGTCTT CTTCAATGCT
  GGCAATGTTC CAGGAAGTGG TCAGGGTTGT ATCTGCATGA ATGACAGGTG CTTCAACTGG
  AGATATGACT AAAAAGTGGG TGGCCATGTA AAACCTCCTT CCTGCAACTC GAATCTGAGG
  AAAAGGAAGC ACCAGGCTAC TACACTTGAC ACTTCAGAGA ACACAGGTTG ACAAAGAATG
  K
  TTAGAGCAGG AGAGCAAAGA GACACTTCCC TGTAGAGGGC AGGCCATCCT AAGAGCTTCC
  AGGGACACAG ACTTTCTTTC CAAATTTGGG TTCAGCTGAG TCCTATTAGA CTTTAATTTG
  TCTTTCAAAA GCCCCCCCCC CCCACTCTCT CTCTGCTTCT TCTCTTTCCT CTTTCCATTT
  CTTTAGTTGC TGAAGGATGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49151746	NES12476019	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30591128					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49151746	NES12476019	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14010834 () rs orientation: forward

Symbol	Name	Function Class
Cfap20dc	CFAP20 domain containing	within coordinates
Rr287211	regulatory region 287211	1434 bp distal
Rr298208	regulatory region 298208	664 bp distal
Rr300930	regulatory region 300930	within coordinates
Rr389289	regulatory region 389289	249 bp downstream