rs30591133 SNP Detail

Summary

• ID
  rs30591133
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14011264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACACATC TTTTTTTATT
  CTCTTTTCTA ATTTTAGCTG CACTTTGGTT TTGTAGTGCA GGCATTATTA TTGTTGTTGT
  TTTGGTGCTG GGGATAGAAT CAGGCTTTCC TCTTGCTACA CAAGTACCCA ACCACTCAGC
  TCCATGTATA GCCCTAGGCT CTTTCTATCT TAACATTAGC ATCTCTCTCT CTAGGATCCT
  Y
  CACCATGATG AGATCTGCAA GTCTTCTGAC GTATCTAACA ACATCCAGTG GCCGAGATTA
  AGGTGAGCAA GTGCTTGCTT GCTGGCACCA GGCTTTATAG ACCCATCTAC TGATGGGAAG
  GGACAGGAAA TCAGGTTGCC TTTCTCACTG TCACCTCCTG CCACATAAGC CAAGGTTCTA
  GTGGCCTGCC TCACTTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39244506	mCV22703837	ABI	CRAMUS_MOUSE	f	SNP	C	T	T					T		T
ss49151751	NES12476005	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	C	T	T	C	T
ss138989842	ENSMUSSNP880863	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30591133					SNP	C	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49151751	NES12476005	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14011264 () rs orientation: forward

Symbol	Name	Function Class
Cfap20dc	CFAP20 domain containing	within coordinates
Rr287211	regulatory region 287211	1864 bp distal
Rr298208	regulatory region 298208	1094 bp distal
Rr300930	regulatory region 300930	388 bp distal
Rr389289	regulatory region 389289	679 bp downstream