rs30591964 SNP Detail

Summary

• ID
  rs30591964
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:14011296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCATTA CACCTGTCAG
  TAAAAACGAG GGGCTACACA TCTTTTTTTA TTCTCTTTTC TAATTTTAGC TGCACTTTGG
  TTTTGTAGTG CAGGCATTAT TATTGTTGTT GTTTTGGTGC TGGGGATAGA ATCAGGCTTT
  CCTCTTGCTA CACAAGTACC CAACCACTCA GCTCCATGTA TAGCCCTAGG CTCTTTCTAT
  M
  TTAACATTAG CATCTCTCTC TCTAGGATCC TTCACCATGA TGAGATCTGC AAGTCTTCTG
  ACGTATCTAA CAACATCCAG TGGCCGAGAT TAAGGTGAGC AAGTGCTTGC TTGCTGGCAC
  CAGGCTTTAT AGACCCATCT ACTGATGGGA AGGGACAGGA AATCAGGTTG CCTTTCTCAC
  TGTCACCTCC TGCCACATAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49151752	NES12476002	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30591964					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49151752	NES12476002	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14011296 () rs orientation: forward

Symbol	Name	Function Class
Cfap20dc	CFAP20 domain containing	Intron
Rr389289	regulatory region 389289	711 bp downstream
Rr487788	regulatory region 487788	1150 bp distal