rs30591966 SNP Detail

Summary

• ID
  rs30591966
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:14011500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGGAAGG GATTCCTAGA
  AGCTTGTGAA AAATAAGTCA ATACAAATTC AGAAAGATGC TCAGGACCTA CTAACTGAAA
  GTTCCCAGAG GAAGTGGTGC AGAGGCTAGG ACTATCCCCA TCCACAAACA AAAGGCCATA
  TAAGCTGTGT CTCCTAGTAT GCGCATAGGA AGTTTTTACA TGTTAGGTGT CTAAGACACT
  S
  TTACTCACCA TTACACCTGT CAGTAAAAAC GAGGGGCTAC ACATCTTTTT TTATTCTCTT
  TTCTAATTTT AGCTGCACTT TGGTTTTGTA GTGCAGGCAT TATTATTGTT GTTGTTTTGG
  TGCTGGGGAT AGAATCAGGC TTTCCTCTTG CTACACAAGT ACCCAACCAC TCAGCTCCAT
  GTATAGCCCT AGGCTCTTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39255213	mCV22703839	ABI	CRAMUS_MOUSE	f	SNP	C	G	G					G		G
ss49151754	NES12476073	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G		C	G	G	C	G	G	G
ss138989837	ENSMUSSNP1472963	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30591966					SNP	C	G	G	G	G	G	G	G	C	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49151754	NES12476073	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14011500 () rs orientation: forward

Symbol	Name	Function Class
Cfap20dc	CFAP20 domain containing	Intron
Rr389289	regulatory region 389289	915 bp downstream
Rr487788	regulatory region 487788	1354 bp distal