rs30591978 SNP Detail

Summary

• ID
  rs30591978
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156569828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGATCTGCA ATGGGACTCA AAGCTTTCTC
  TAAAGTCTTT TTGTAGAGTT GAAATAACTG CAAAATGCTC TCTGAGACTG GGAACAGGTG
  GCTTCCTTAG GTCAGAGGGA CCAATAGTGA GGGTGAGGGT CTTCAGCTTG TGGTGTGGTG
  R
  ATCACATGGC TTTCCTGAGC TGAGCCACAG GGGCAGTACA GGTGCAGCAT GGGCTAGCTC
  TGTCCACCCT CACCTGGGCT GCCACAGAGC AAGCAGGAGG TCTGTCATAA TAGGGAGGAA
  GACTGAAATA TGCAGCTGTA GGCCCCTCTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44943683	mCV24597259	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss49721023	NES13072118	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		A	G	G	A		G		A	A	G		A
ss145803877	ENSMUSSNP6197316	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G					G
ss320072649	CHEV_1_158672389	CHEVERUD	SCREENING_POP	f	SNP													A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30591978					SNP	A	A	G	G	G	A	G	G	A	G	G	A	A	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721023	NES13072118	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156569828 () rs orientation: forward

Symbol	Name	Function Class
Gm69913	predicted gene, 69913	1199 bp downstream
Rr421237	regulatory region 421237	within coordinates
Rr421238	regulatory region 421238	1652 bp proximal