rs30592773 SNP Detail

Summary

• ID
  rs30592773
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:118342100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAAGTGA AAAATTCAGC
  CAAATCATCG GGCTTTGTGT GTGGCAGTTC CCGCATGACT TTAAATAGCC AGTTAGTGCT
  TTTCTGTTCG GTGAAAAGAA AAAAAAAAGG CATTTTCACT AATTGGTTCT TTCATCAGCA
  TGTGGACTGC ATTGTCAATA ATTGGCCTAG GAGGGGTGAG CATGTTAGAC TGTTGTTTTG
  M
  CTTGGGATGG GGAAGAAAAG AGAGAGAGAA ACACAGAAAG GAATTGGATC TGCAGATGAA
  TGGAGGAAGG ACTGTGTAAA GGTGAGAAAT GAAAGAACTC AGGTGACATG GTCACTTAAG
  GTACACCATA GGTCAACAGT CCTGTCTTTG CATTTATACA TGGTCATCTG TTCCACACAC
  AGCACCAACG CTGGAGGATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46424595	mCV25325269	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss138900190	ENSMUSSNP318738	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30592773					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:118342100 () rs orientation: forward

Symbol	Name	Function Class
Rr369642	regulatory region 369642	952 bp downstream
Rr474222	regulatory region 474222	874 bp distal
Tssr115561	transcription start site region 115561	1600 bp downstream