rs30593057 SNP Detail

Summary

• ID
  rs30593057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70442734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCTGCC CGGCTGAGGG
  CTTGAGGCCA AACTGCCTTC GGCATCAGCA GTTGCACCCA TCAGCTGACA GGCCTTCCTT
  CCCTAATGTC ACTGTGTCCC ACCCTCCCAG CAAATCCAGA AGTGTCCTCT CTAGGGAAAA
  AGGACCAGTT CTCCATCACC ACCTTGTTTC AGGAGCTACT GACCCTAGGA TACCTCCATC
  R
  GCTCCCCTCC CACTGAGCTC CTGGGAATAC TCGAGGTTAG GATAGGGCCC CCCATGGTGG
  TCCTGGTTTT TCTCCCAGCA GGCTGCCTGG AGACATTTGG CAGAACCTAA GGAAGACAGA
  GGTCTCCTGG GGAATTGGTA TCTGTCTAGC ATAAAACGGA CACCTCTGGT GAGTTCCCAG
  AATCCAGGCA GCCCCTGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39201334	mCV24337818	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss139681798	ENSMUSSNP3189052	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30593057					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70442734 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6688	CpG island 6688			342 bp proximal
Gm26908	predicted gene, 26908			within coordinates
Gm49417	predicted gene, 49417			39 bp upstream
Rr494880	regulatory region 494880			1155 bp distal
Rr494881	regulatory region 494881			within coordinates
Rr494882	regulatory region 494882			27 bp distal
Rr494883	regulatory region 494883			50 bp proximal
Rr494884	regulatory region 494884			727 bp proximal
Rr494885	regulatory region 494885			863 bp proximal
Sorbs3	sorbin and SH3 domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr126403	transcription start site region 126403			1878 bp downstream
Tssr126404	transcription start site region 126404			105 bp downstream
Tssr126405	transcription start site region 126405			48 bp downstream
Tssr126406	transcription start site region 126406			30 bp downstream
Tssr129550	transcription start site region 129550			1832 bp upstream
Tssr129551	transcription start site region 129551			1819 bp upstream
Tssr129552	transcription start site region 129552			1805 bp upstream
Tssr129553	transcription start site region 129553			541 bp downstream
Tssr129554	transcription start site region 129554			588 bp downstream
Tssr129555	transcription start site region 129555			700 bp downstream
Tssr129556	transcription start site region 129556			753 bp downstream
Tssr129557	transcription start site region 129557			797 bp downstream
Tssr129558	transcription start site region 129558			826 bp downstream