rs30593454 SNP Detail

Summary

• ID
  rs30593454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134254159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC CCCAGCCTGC TGTGCCTCCC
  Y
  GGCACCAAAA GAGCCTAGGA CACAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44943414	mCV22357581	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss145505236	ENSMUSSNP3514960	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30593454					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134254159 () rs orientation: forward

Symbol	Name	Function Class
Ppfia4	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	within coordinates
Rr12474	regulatory region 12474	1359 bp distal
Rr24642	regulatory region 24642	916 bp distal
Rr24643	regulatory region 24643	355 bp proximal
Rr24644	regulatory region 24644	1482 bp proximal
Tssr8873	transcription start site region 8873	870 bp downstream
Tssr13789	transcription start site region 13789	526 bp downstream
Tssr13790	transcription start site region 13790	543 bp downstream