rs30594916 SNP Detail

Summary

• ID
  rs30594916
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119353779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACATTTC TTAGTTTTAT
  ATTCTTAAAA ACTTTCCTGT TACTAATACT GCATAATACA CTGTTTTATT AACTTATGCA
  TTTCCTGTTC ATTTTATTCC TCCTTAATTC TAAACAACTG GGAATAATGT TGGAATTTAC
  AGAAGAAAAA AAAAATAGAG CCAGAAAGGA AAGGGGGGTT TATTTGCTCA TAGTTTTTAA
  W
  GCCTATTATA AGTGTAGTGT TTTTGGTTTT TTTGTTTGTT TGTTTGTTTT GTTTTTTTGA
  GTAAGGAAGT TTTGGAAAAT AAAGGAAGAA AACAGCCCTA CATGTCTGCA GCATCTCCAA
  GTGATAAGGA AAGCGCTGAT GTAGGAGGAA CTGAAGCTGT CTGGCCTTAC CTCTGCTTTT
  CAATCCACCT GCCTCCCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46424712	mCV22975023	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss138908014	ENSMUSSNP5298291	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30594916					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119353779 () rs orientation: forward

Symbol	Name	Function Class
Macc1	metastasis associated in colon cancer 1	354 bp upstream
Rr474303	regulatory region 474303	104 bp proximal
Rr474304	regulatory region 474304	342 bp proximal
Tssr115574	transcription start site region 115574	588 bp upstream
Tssr115575	transcription start site region 115575	646 bp upstream