rs30595213 SNP Detail

Summary

• ID
  rs30595213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107343501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCAATGC TCATGCTTCC
  TTGGTACCAC CTTATGTCAT TCTCCTGGAG CTCTGTATAC CTACTCTTAC TCCTGTTAGA
  CTAAGAAGAA TGGAGGTTCT GGCAGCCTAA GCAAGCCAGG ACGACTGGGA AGTAACAGAT
  CTGGGACTCA GATCTCACCC CAGCACTGTG GTTCCATTCT CTGAGGCAGC CCCCAGGTTA
  R
  GACTCAGCTC TAGTCCCAGG GACAGCGGAA GCCTGGAGTG TGTCTTCCTA CATGATGCAG
  CTTCTGAGGC GGAAGGGCAA CTGCCTCTGT CTACTCCAGG GTTCTGAAGG TGTTACTGGG
  TTTCCCAGCT GCATCCCCTT AGGTCACCTC TGGATGTTCC TGGCATCCAA TACTCGTGTG
  CTGTTTGCTA GGTTCTTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45444427	mCV22906696	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A
ss46855554	NES10710951	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	A	G	A	G	G	A
ss135584014	ENSMUSSNP5114411	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30595213					SNP	G	G	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855554	NES10710951	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107343501 () rs orientation: forward

Symbol	Name	Function Class
Rr582973	regulatory region 582973	280 bp proximal