rs30595459 SNP Detail

Summary

• ID
  rs30595459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:179347041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATC CTGCCCCTTG CCCCACCCCT
  R
  CCTCTCTGCC TCTGCCCCTG CCCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss44944015	mCV23635951	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss146368915	ENSMUSSNP5150562	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30595459					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:179347041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1095	CpG island 1095	1333 bp distal
Gm5561	predicted gene 5561	902 bp downstream
Rr396646	regulatory region 396646	1314 bp downstream
Rr424271	regulatory region 424271	1023 bp distal
Rr424272	regulatory region 424272	1416 bp distal
Smyd3	SET and MYND domain containing 3	1435 bp upstream
Tssr15501	transcription start site region 15501	1487 bp upstream
Tssr15502	transcription start site region 15502	1450 bp upstream
Tssr15503	transcription start site region 15503	1431 bp upstream