rs30597267 SNP Detail

Summary

• ID
  rs30597267
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149147620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGTTAGAT AAAGCCCCGG
  GTTAATTTCC ATCAATACCA AGCTCCTTAC ACCGTTGATA TTTCAAACAT ATAAAAAGCT
  GTCAATCTTG GTCAGACAGA ATAAAGGAGG TGGTTGTTGT AAGACTGAGC AGACATGCCA
  GTCAATTACA GATGTGATTC TGTGTTCTAC TCTACTAGAG TAACCATTCC TGGCATGCCA
  Y
  CAGTGAAATA ACTCTTTAAG ACTGCTATAA TGCTAATACA GATCAAAAGG AAAAGCGATG
  AAGAAGTTGA AAAACCAGAA AAAGACACCT AGTTCTGGTA TGTCCAGACA ACAGATGGGT
  AAGTTGGATA AGATATGTTT GCTATAGGGA GAGGGAAAGA AGTACACTGA CCGATAAGCC
  AGGAAGTCAT CGTTATATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45445109	mCV24054271	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss51052162	NES13893074	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		T	C	C	C		C	C	T		C
ss136071422	ENSMUSSNP4319820	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss321018989	CHEV_3_149104947	CHEVERUD	SCREENING_POP	f	SNP													C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30597267					SNP	T	T	C	C	C	T	C	C	T	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052162	NES13893074	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149147620 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	1371 bp upstream
Gm30382	predicted gene, 30382	within coordinates