rs30597326 SNP Detail

Summary

• ID
  rs30597326
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124018892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAATAGC TCACTAAGAT
  ACCATGCTAC AGCTCCTTAT ATGACAGTGT CTGACAAACA TATGATGACA TACTAATGTT
  GTACCCACAA TTTCTTCTGT GACAGTGATC AATATGTAAG CTTATATTAT ACAAGGTGGT
  TCACACTTCT AAGGATTTTA AATAATTTTA TTGTGTAACT GCCAAGTTAT TAAAGATTTA
  Y
  TCAAAGGGCA AAATGAGTGC TGTTTTGTGA TAAATGTGAG TTAATATTGT ATTTCTTTCT
  AACATTTTAA AACATGCCAT TTTGAACTAT TTCATAAAAA CTAATCAAGC TGTATAAAAA
  AATGGATTAA AATATTCCCT TTTTTTAACT ATCTTGGTGG AAAGCCTTTG TTGTTTGTAT
  GTTCTCATAA TAAATATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45444923	mCV25183699	ABI	CRAMUS_MOUSE	f	SNP			C					T		T
ss60445862	NES15938721	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C		C	T	T	T		C	T	T	T		T
ss135782556	ENSMUSSNP4498123	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss320926396	CHEV_3_123928161	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30597326					SNP	T	T	C	T	C	T	C	T	C	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445862	NES15938721	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124018892 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	936 bp proximal