rs30598266 SNP Detail

Summary

• ID
  rs30598266
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127795707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CACAGGCTCT CATTTGAGAC TCATGTGTAA TTTAGCCTTT GGTATTTTAT CTTAAGCTTA
  GTTACTATTA CAGGAGGGAA GCACAGTAAT GTGAGCTTGC ATGCACCCAG AACTAGCCGC
  AGTTGATAGC AATTTTACTT TAAAATTCTA AGCAATATAG GAGTAGAATT GCATTTAACC
  CACAAGCCAG CAGCTCACAG GGGATCAGTG GTAAACTGTG AAGCAATGTT CTAAAATTTC
  ATTTGGGATG TAAATATACT TTCTAAATTA AACTACTTAT AAGGAAATCA GGGATTCCTC
  M
  ATCTGGCCAC TAGGTGTCAG GAAAGCTCCA TTCTAGAAAC TTCTGGTGGG GGAAGGGGAC
  ACGGTGTAGT CCATTTGAGG ACATCTGCTG TTCACAAAGG TAAAGCAAAC AAAGTAAAAC
  ACAACAACAA CAATAACAAT AGCAACAGCA ACAGCAAAGC CCAACCATCT TACAAATACA
  CAGACTGCCC AGTGAAGGGC CTTACGCAGA GGACCAGAGA ACTAACACCA GTCACCAACG
  GTGCAAAAGT CTACTTGTGG CCACAGTGGT AAGTCCCTCC TTTTGTTACT ATGTTCTATG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45445812	mCV25235055	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30598266					SNP	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127795707 () rs orientation: forward

Symbol	Name	Function Class
Rr52	regulatory region 52	within coordinates
Rr584916	regulatory region 584916	within coordinates
Rr584917	regulatory region 584917	3 bp proximal