rs30598649 SNP Detail

Summary

• ID
  rs30598649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:177574076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCC AGAGAAAGTA TCCACAAACA
  Y
  TAGAAGGTAT TTGTAACCAT ATTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44944116	mCV22349537	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss146348010	ENSMUSSNP1341319	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30598649					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177574076 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr424056	regulatory region 424056			1259 bp distal
Rr424057	regulatory region 424057			1700 bp proximal
Spmip3	sperm microtubule inner protein 3			Intron
				Noncoding-Transcript-Variant
Tssr15447	transcription start site region 15447			1867 bp upstream