rs30598818 SNP Detail

Summary

• ID
  rs30598818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:79204020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGC GGCCGCCATG CTGAGCCCTA
  Y
  GGAAGCCTCT GCTCACTGCA CTTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39202635	mCV24524204	ABI	CRAMUS_MOUSE	f	SNP		T	T					C
ss49326428	NES12590159	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	C	T	T		C	T	T		C
ss139803529	ENSMUSSNP1276258	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss324676651	CHEV_14_79366387	CHEVERUD	SCREENING_POP	f	SNP													C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30598818					SNP	T	T	T	T	T	T	T	C	C	C	T	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49326428	NES12590159	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79204020 () rs orientation: forward

Symbol	Name	Function Class
Gm6997	predicted gene 6997	12 bp upstream
Tssr126779	transcription start site region 126779	284 bp upstream
Tssr129883	transcription start site region 129883	within coordinates
Vwa8	von Willebrand factor A domain containing 8	within coordinates