rs30599052 SNP Detail

Summary

• ID
  rs30599052
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171976233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG CCCCCTTCCC CCATCCCAAG
  W
  TCTCAGGCCC AGCACCTCGT ACGGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44944418	mCV23114259	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss120006869	PARCsnp_1.17512	PARC_SEQ	INBRED	f	SNP		A	T
ss120009741	PARCsnp_1.07138	PARC_SEQ	INBRED	f	SNP		A	T
ss146182864	ENSMUSSNP4241319	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss320122957	CHEV_1_174078797	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30599052					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171976233 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1037	CpG island 1037			within coordinates
Dcaf8	DDB1 and CUL4 associated factor 8			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm70088	predicted gene, 70088			679 bp upstream
Rr372457	regulatory region 372457			within coordinates
Rr423469	regulatory region 423469			690 bp distal
Rr423470	regulatory region 423470			478 bp distal
Rr423471	regulatory region 423471			within coordinates
Rr423472	regulatory region 423472			1300 bp proximal
Tssr10170	transcription start site region 10170			618 bp downstream
Tssr10171	transcription start site region 10171			572 bp downstream
Tssr10172	transcription start site region 10172			563 bp downstream
Tssr10173	transcription start site region 10173			490 bp downstream
Tssr15148	transcription start site region 15148			701 bp upstream