rs30599457 SNP Detail

Summary

• ID
  rs30599457
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:62374334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTATATATA ATATTTGTAT ATATTATGGA TATCCATTGC
  ATGAACTGGC AGACCTTTTT TATTAAATTT TCGATTGTTC TAATCATAAA CAATGCAATC
  W
  TTTCAAATTA CTGCAAATCT TCCTGATCTC CGAGCTCCCC TAAAATGTTC CAGTTGGCAA
  CTACAGGAAG AATGCTGGAA AAAGTCCCAG AGAATTCTA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45446389	mCV22847960	ABI	CRAMUS_MOUSE	f	SNP	A						A		T
ss51531140	NES14690696	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	T	A	A	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30599457					SNP	A	A	A	A	A	A	A	A	T	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51531140	NES14690696	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62374334 () rs orientation: forward

Symbol	Name	Function Class
Dhx36	DEAH-box helicase 36	1100 bp downstream