rs30599488 SNP Detail

Summary

• ID
  rs30599488
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116697160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGATCATTAA AATGAGGAGA GACCTGAAGC TTGTGCCGAC CACCTGCAGC ACCTACTAAG
  TCCGAAGACC CATGGGCATC GCTATCGAGG AACGCTGAAG TCTGGGTTTC CCAGCTCACA
  TTCAAGTGGG CTAAATAACC TGGGCCTTTA TGTGTAATTC TGCATCCCTA AGGGAACATT
  GTACCTGAGA TGACATGACT CTCAGCATCT CATGCCAGAT TTAAAACTGT AAACTGGAAT
  GGATAGCAGA TGAAGACAAT TATCTCAGGC AAAAAAAAAA AAAAAAAAAA AAAAAAGAAA
  R
  AAAGAAAGAA AGAAAAAAAA AAGAGAAAAG AAAGAATAAA TGGAGATTGT GTCTTTGGGA
  ATGAGACAGG TTTGGTGTAG CCCAGGCTGG CCTTTAACCA GTTGTATAAC CAAAGATAAC
  CCTGAACCTC TGATCTGCCT GCCTCTGTTT CCTGGGTGGT TTACAGGTGT GCACCACTAT
  ATCTGGTTTT AAGGGAACTG TAATTTTCAT GACGATGCTG CTATGGTACT TTAAAGACTA
  CATTTATGTT TGACTAGTTT ATTTAAAAGA TTTTGTCTTA GAGTTTAAAA AAAAATTACT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45446289	mCV24793249	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30599488					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116697160 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			578 bp proximal
Rr583801	regulatory region 583801			609 bp proximal
Rr583802	regulatory region 583802			850 bp proximal
Tssr31391	transcription start site region 31391			66 bp upstream
Tssr31392	transcription start site region 31392			152 bp upstream
Tssr31393	transcription start site region 31393			186 bp upstream
Tssr31394	transcription start site region 31394			208 bp upstream
Tssr31395	transcription start site region 31395			853 bp upstream