rs30599592 SNP Detail

Summary

• ID
  rs30599592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132796339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCTTTCCA CTCCCCCGGC CCCGGACCTC ACTGCATCCC
  ATTTTCCCTT CCTTGAGAGC CCACCCCTTC ATGGCCCCTT ACTAGTTTAA AGGTGTTTTT
  Y
  ATTAGTACTA TAGAACAACG TTCAAACCTC AATCTCCTTT TTGAAGTTAG GCCTCTTTAA
  AATGATTGAG TCACAATTTC AGCAGCGTCA ATGGCAGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45444748	mCV25027921	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135916543	ENSMUSSNP5702149	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30599592					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132796339 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13847	CpG island 13847			602 bp proximal
Gstcd	glutathione S-transferase, C-terminal domain containing			Intron
				Noncoding-Transcript-Variant
Ints12	integrator complex subunit 12			1277 bp upstream
Rr398028	regulatory region 398028			317 bp upstream
Rr398029	regulatory region 398029			1179 bp upstream
Rr585500	regulatory region 585500			within coordinates
Rr585501	regulatory region 585501			1237 bp proximal
Rr585502	regulatory region 585502			1273 bp proximal
Rr585503	regulatory region 585503			1445 bp proximal
Tssr31768	transcription start site region 31768			1249 bp upstream
Tssr31769	transcription start site region 31769			1266 bp upstream
Tssr31770	transcription start site region 31770			1308 bp upstream
Tssr31771	transcription start site region 31771			1345 bp upstream
Tssr31772	transcription start site region 31772			1992 bp upstream
Tssr35744	transcription start site region 35744			1158 bp downstream
Tssr35745	transcription start site region 35745			1186 bp downstream
Tssr35746	transcription start site region 35746			1220 bp downstream
Tssr35747	transcription start site region 35747			1451 bp downstream
Tssr35748	transcription start site region 35748			1467 bp downstream
Tssr35749	transcription start site region 35749			1800 bp downstream