rs30599916 SNP Detail

Summary

• ID
  rs30599916
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18792953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATTCCA GTTATTCATC
  TGTCAGTCGA TTAATACAGA ATATACAAAA TACTCAAACT CTCTAAATTT CTTTGGCCTT
  CATGGCAGAA GCAATATGAG GAAAGGAATG TTATTACTTT GGAAATTGTC GCAATAAGAC
  ACATGTGTTG TACTGCAGCT GTGAATCTAA GGCCTACCAA CTTTAGAAGT TGATCTGTGG
  M
  AAATATGGCT ATCTTGCCAA GTGCAAGAGA AATTATAAGT GTCAAGGCTG GACAAACAAG
  GTACTAAAAA TTGTCTATTG CAGATTCAGA CATGGATTCT TTGAAGGAAC CACACCTCAA
  CCCAAGAGGG CAGCTGTTGC AGTATCCAGT TCATCTTGAG GGTTTCAGTC AGTCATAAAA
  TAAATGTTTG GGTTCCAATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45944407	mCV23957269	ABI	CRAMUS_MOUSE	f	SNP		C	A					A		A
ss51246177	NES13802755	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	A	A		C	A	A	A	C	A	A	C	C
ss133041132	ENSMUSSNP163543	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30599916					SNP	C	C	A	A	A	A	A	A	C	A	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51246177	NES13802755	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18792953 () rs orientation: forward

Symbol	Name	Function Class
Gm43228	predicted gene 43228	within coordinates