rs30600519 SNP Detail

Summary

• ID
  rs30600519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:117658632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG AAGTACAGGA GGCCTTCTCC
  Y
  CAGCTGAGCT GATAATCATA TCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45446302	mCV24018941	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss135694648	ENSMUSSNP1880210	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss320900585	CHEV_3_117567901	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30600519					SNP	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117658632 () rs orientation: forward

Symbol	Name	Function Class
Gm52614	predicted gene, 52614	1945 bp downstream
Rr583873	regulatory region 583873	671 bp proximal
Rr583874	regulatory region 583874	1915 bp proximal
Snx7	sorting nexin 7	Intron