rs30600679 SNP Detail

Summary

• ID
  rs30600679
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52179047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATCACAG TTTGCTTAAA
  CAGCCAGACT TGGACAATAT TTGTAACTTT TTCACAAAAA CATACATCAC TGAAGCTGCG
  CTTATAAGAG CCACTTCCAG AGTTCGTGCA AAGGGTCCTA CAAAGGCACG CAGGGACACA
  CCGCTTGGAG TCACAGTTTT CGTCACAGAG CCACTAGCCA CTACACGTTG AACAAGTTAA
  K
  TTGTGTCTTA TCAAGTCACC TCTACAACAG CATTAATTAC ACAAGGAATA TAGGTAGTTT
  GAATAAAAAT ATCTTTAACA GCTTGGAGCT ATTGAGACAG GAACACTTCC ACGTACATGC
  ACATTAAAGA ACTCAAGTGC AACACACAAC ATTGGCACTA AACGAGGTGG GGGGGCTTTT
  TGTGTGTGTA GTTTTTTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45944179	mCV22669672	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	T
ss133191026	ENSMUSSNP6449107	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30600679					SNP	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52179047 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17422	CpG island 17422	1432 bp distal
Cpgi17423	CpG island 17423	1170 bp proximal
Gm28308	predicted gene 28308	within coordinates
Hoxa3	homeobox A3	within coordinates
Hoxa5	homeobox A5	within coordinates
Hoxaas3	Hoxa cluster antisense RNA 3	within coordinates
Tssr56510	transcription start site region 56510	823 bp downstream
Tssr60990	transcription start site region 60990	1094 bp upstream