rs30602472 SNP Detail

Summary

• ID
  rs30602472
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171122438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGC GTTGGATGGC TTTAAAGCGG
  W
  CCCTGAATGC ATTCGATTTT TATTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss44945097	mCV22659554	ABI	CRAMUS_MOUSE	f	SNP		T	T					A		T
ss49750373	NES13031300	PERLEGEN	MM_PANEL2	f	SNP	T			A	T	A	T		A	T	T	T		A	T		T
ss119999063	PARCsnp_1.01800	PARC_SEQ	INBRED	f	SNP								A		T
ss146159421	ENSMUSSNP5084394	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss320117858	CHEV_1_173224996	CHEVERUD	SCREENING_POP	f	SNP													T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs30602472					SNP	T	T	T	A	T	A	T	A	A	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750373	NES13031300	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171122438 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1022	CpG island 1022	within coordinates
Rr28967	regulatory region 28967	within coordinates
Rr31956	regulatory region 31956	1163 bp proximal
Rr372447	regulatory region 372447	within coordinates
Tssr15031	transcription start site region 15031	78 bp upstream
Tssr15032	transcription start site region 15032	26 bp upstream
Tssr15033	transcription start site region 15033	72 bp downstream
Ufc1	ubiquitin-fold modifier conjugating enzyme 1	within coordinates