rs30603604 SNP Detail

Summary

• ID
  rs30603604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144992090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGG TCAGCCAATG TGACCCGAAA
  Y
  GTTTCGTTTA TTAGAGCTGA GTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss45944447	mCV23990251	ABI	CRAMUS_MOUSE	f	SNP		C	C			T		T
ss48141266	NES11826476	PERLEGEN	MM_PANEL2	f	SNP	C			T	T		C	T	T		T
ss133960823	ENSMUSSNP4716971	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
ss322067422	CHEV_6_144994884	CHEVERUD	SCREENING_POP	f	SNP										T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs30603604					SNP	C	C	C	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48141266	NES11826476	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144992090 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	1749 bp proximal
Gm15687	predicted gene 15687	1173 bp upstream
Gm26666	predicted gene, 26666	1195 bp upstream
Rr641039	regulatory region 641039	697 bp distal
Rr641040	regulatory region 641040	683 bp proximal
Tssr64030	transcription start site region 64030	1141 bp downstream
Tssr64031	transcription start site region 64031	1166 bp downstream
Tssr64032	transcription start site region 64032	1241 bp downstream
Tssr64033	transcription start site region 64033	1272 bp downstream
Tssr64034	transcription start site region 64034	1300 bp downstream
Tssr64035	transcription start site region 64035	1361 bp downstream