rs30604034 SNP Detail

Summary

• ID
  rs30604034
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17845862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG TATTGTTCCG TTCTTTCTCT
  Y
  TTTTTCCTTG GAGTATCAAT TTTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45446242	mCV22663396	ABI	CRAMUS_MOUSE	f	SNP		T						C		C
ss46817748	NES10864818	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C		T		T	C		T	C	C	T		C
ss134653782	ENSMUSSNP5221082	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								C
ss320673719	CHEV_3_17691698	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30604034					SNP	T	T	C	C	T	T	C	C	T	C	T	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817748	NES10864818	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17845862 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12995	CpG island 12995	1017 bp distal
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	within coordinates
Rr573846	regulatory region 573846	1636 bp distal
Rr573847	regulatory region 573847	1466 bp distal
Rr573848	regulatory region 573848	931 bp distal
Rr573849	regulatory region 573849	70 bp proximal
Rr573850	regulatory region 573850	922 bp proximal
Rr573851	regulatory region 573851	1532 bp proximal
Tssr28480	transcription start site region 28480	1935 bp downstream
Tssr28481	transcription start site region 28481	1743 bp downstream
Tssr28482	transcription start site region 28482	1726 bp downstream
Tssr28483	transcription start site region 28483	1630 bp downstream
Tssr28484	transcription start site region 28484	1564 bp downstream