rs30604809 SNP Detail

Summary

• ID
  rs30604809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:20725114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTA CTGCAGCACC TGAAAGGAGG
  Y
  CTCACTCTTC CTGGGCCTCT TCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39202697	mCV23001718	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T	C
ss139195108	ENSMUSSNP6707790	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		C
ss324564664	CHEV_14_21494268	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30604809					SNP	C	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20725114 () rs orientation: forward

Symbol	Name	Function Class
4733401D01Rik	RIKEN cDNA 4733401D01 gene	835 bp upstream
Cpgi6207	CpG island 6207	234 bp distal
Rr287464	regulatory region 287464	1714 bp distal
Rr296876	regulatory region 296876	within coordinates
Rr389336	regulatory region 389336	within coordinates
Sec24c	SEC24 homolog C, COPII coat complex component	within coordinates
Tssr124386	transcription start site region 124386	739 bp downstream
Tssr124387	transcription start site region 124387	675 bp downstream
Tssr124388	transcription start site region 124388	487 bp downstream
Tssr127653	transcription start site region 127653	920 bp upstream
Tssr127654	transcription start site region 127654	330 bp upstream