rs30604878 SNP Detail

Summary

• ID
  rs30604878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136804131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTATTATCA CTTCTTTCTC TTCCATTCCA AATGAATGAA
  ACTTCCAAAA ATTAGCCTTG CCCATAGTAA AAAAAGGAAC AAATATTTCC TGTTCAAAGT
  R
  TGCGACACTT TCCTACAGGC TACATCTCCT GTGGCTCCCC CTTTAAGCAT TAAACAAATC
  TACTTTCTTT CTACATTAGG AAAGGGAAGA TCCCGAGGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss45944467	mCV24051050	ABI	CRAMUS_MOUSE	f	SNP	A		A					G	A
ss51454435	NES13991542	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A	A		A	A	G	G	A	G
ss133848544	ENSMUSSNP237221	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30604878					SNP	A	G	A	A	G	A	A	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51454435	NES13991542	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136804131 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	493 bp upstream
Cpgi18110	CpG island 18110	436 bp proximal
Rr380176	regulatory region 380176	within coordinates
Rr640072	regulatory region 640072	150 bp proximal
Rr640073	regulatory region 640073	1090 bp proximal
Rr640074	regulatory region 640074	1721 bp proximal
Tssr2044	transcription start site region 2044	1324 bp upstream
Tssr59337	transcription start site region 59337	612 bp upstream
Tssr59338	transcription start site region 59338	628 bp upstream
Tssr59339	transcription start site region 59339	666 bp upstream
Tssr59340	transcription start site region 59340	697 bp upstream
Tssr59341	transcription start site region 59341	1281 bp upstream
Tssr59342	transcription start site region 59342	1679 bp upstream
Tssr63834	transcription start site region 63834	1100 bp upstream
Tssr63835	transcription start site region 63835	1037 bp upstream
Tssr63836	transcription start site region 63836	581 bp downstream
Tssr63837	transcription start site region 63837	614 bp downstream
Tssr63838	transcription start site region 63838	633 bp downstream
Tssr63839	transcription start site region 63839	687 bp downstream
Tssr63840	transcription start site region 63840	918 bp downstream
Tssr63841	transcription start site region 63841	991 bp downstream
Tssr63842	transcription start site region 63842	1053 bp downstream
Wbp11	WW domain binding protein 11	within coordinates