rs30605550 SNP Detail

Summary

• ID
  rs30605550
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128176101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATTCAATCC ATAACACTCT GCTCTCCAGG CTTCTAAGTT CTCATATATA TTTTTTGACA
  GTCCCCAAAT TCTTATCCCA TGTCACTATC AAACTGTAAA TACAATGTCT TATCAAAATA
  TAGGTAGAAG GTTATGAAGT CACAATCCTG TAATTCCAGC ATATGATTGG GCAGGAGAAT
  TGCTTGTGCC TTGGAGTTAG AGACAGGTAC AGGCAATATA TTGAGACACA CACCCCACCC
  CCTAGATGTG GAAGTAATAG AAAGTAAACC TACCAAAACT TTCCAAAGAA AACAAAAAAT
  W
  AAAAAAAAAA CAAATGATTA AATGTCCCTA ATCTTGAAAA TCTGAAATTC TCCAGAACTT
  CTTGACTACT ACGATGCAGC AAACAAAAAC TTTCATACAG ATGAAACACT TTTGCATAAA
  TTAAAAATAT TTTAATTACC TTCACACTAT TGATTTCCTT ATGCAATAAA CCTTTCTTCC
  AGGAAAAAAA AAATGCCCTT TAAGATACAC TTAAAAGTTA CAGTTCTATT AGTCTTTAAG
  GCACAGATGA GAAATGTCTT GAAAAATAAT CCCAGAACAG GATGACTCAA GAACACTGGC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45945693	mCV24158468	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss133637980	ENSMUSSNP5476962	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs30605550					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128176101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	897 bp proximal
Gm10010	predicted gene 10010	within coordinates
Gm66766	predicted gene, 66766	1166 bp upstream
Rr399953	regulatory region 399953	1369 bp upstream
Rr639207	regulatory region 639207	783 bp proximal
Rr639208	regulatory region 639208	1177 bp proximal
Rr639209	regulatory region 639209	1434 bp proximal
Rr639210	regulatory region 639210	1581 bp proximal
Tssr63410	transcription start site region 63410	1414 bp downstream
Tssr63411	transcription start site region 63411	1436 bp downstream
Tssr63412	transcription start site region 63412	1438 bp downstream
Tssr63413	transcription start site region 63413	1460 bp downstream
Tssr63414	transcription start site region 63414	1500 bp downstream