rs30605867 SNP Detail

Summary

• ID
  rs30605867
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48652263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT GTACTCTCTA ACCCCTCTGC
  K
  TTTCTCTGCT TCTTCTACCC TCTTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss45945988	mCV23169301	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss133165793	ENSMUSSNP2139139	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss321794338	CHEV_6_48625328	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs30605867					SNP	G	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48652263 () rs orientation: forward

Symbol	Name	Function Class
Gimap9	GTPase, IMAP family member 9	821 bp upstream
Gm46958	predicted gene, 46958	503 bp downstream
Rr629719	regulatory region 629719	55 bp distal
Rr629720	regulatory region 629720	319 bp proximal
Tssr56160	transcription start site region 56160	496 bp downstream
Tssr56161	transcription start site region 56161	120 bp downstream
Tssr56162	transcription start site region 56162	785 bp upstream
Tssr56163	transcription start site region 56163	831 bp upstream
Tssr56164	transcription start site region 56164	864 bp upstream
Tssr56165	transcription start site region 56165	1079 bp upstream