rs30606017 SNP Detail

Summary

• ID
  rs30606017
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134806730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTAGAAGT GGTTATATGG TAACTAATTC TTGTGTTTCA
  TGTTCTGAAG AACTGCCCAA TTTTTTTCCC AAAGCATCTG CCCCACTTTA CCGCGGGCCG
  W
  CATGGGTGGG GAGAAGGCGA AACATTTGTC CTAGCTTTCC AAAAGAGGGT TTTCCAGTTC
  TCCACCTCCA GTTCGGCCTC CGCAGAGCCT CGAACAGTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45944476	mCV24013516	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T	A
ss133787589	ENSMUSSNP4580280	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		A
ss321982533	CHEV_6_134779785	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30606017					SNP	T	T	A	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134806730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	162 bp proximal
Crebl2	cAMP responsive element binding protein-like 2	387 bp upstream
Gm67917	predicted gene, 67917	within coordinates
Rr368197	regulatory region 368197	118 bp upstream
Rr639726	regulatory region 639726	1025 bp distal
Rr639727	regulatory region 639727	1241 bp distal
Rr639728	regulatory region 639728	within coordinates
Rr639729	regulatory region 639729	318 bp proximal
Rr639730	regulatory region 639730	499 bp proximal
Rr639731	regulatory region 639731	694 bp proximal
Tssr59250	transcription start site region 59250	378 bp upstream
Tssr59251	transcription start site region 59251	449 bp upstream
Tssr59252	transcription start site region 59252	552 bp upstream
Tssr59253	transcription start site region 59253	997 bp upstream
Tssr59254	transcription start site region 59254	1265 bp upstream