rs30607807 SNP Detail

Summary

• ID
  rs30607807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87755607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAA TGAGGATAAA CAGGAGGCAG
  Y
  TTAGGGTTAG AAGTCTGCTA ATCGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss45447344	mCV23485211	ABI	CRAMUS_MOUSE	f	SNP	T	T	C			T		C
ss51575807	NES14668814	PERLEGEN	MM_PANEL2	f	SNP	T			C	C		C	C	C	C		C		T
ss135468495	ENSMUSSNP2853934	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
ss320835412	CHEV_3_87652222	CHEVERUD	SCREENING_POP	f	SNP											C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs30607807					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575807	NES14668814	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87755607 () rs orientation: forward

Symbol	Name	Function Class
Rr367451	regulatory region 367451	1150 bp downstream
Rr579559	regulatory region 579559	1285 bp distal
Rr579560	regulatory region 579560	1056 bp proximal
Sh2d2a	SH2 domain containing 2A	within coordinates
Tssr29833	transcription start site region 29833	1528 bp downstream
Tssr29834	transcription start site region 29834	1512 bp downstream
Tssr29835	transcription start site region 29835	1446 bp downstream
Tssr29836	transcription start site region 29836	1407 bp downstream
Tssr29837	transcription start site region 29837	1301 bp downstream
Tssr29838	transcription start site region 29838	1233 bp downstream
Tssr29839	transcription start site region 29839	1153 bp downstream
Tssr33958	transcription start site region 33958	1699 bp upstream
Tssr33959	transcription start site region 33959	1499 bp upstream
Tssr33960	transcription start site region 33960	1395 bp upstream
Tssr33961	transcription start site region 33961	805 bp downstream