rs30608400 SNP Detail

Summary

• ID
  rs30608400
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4878564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAA CGAAGGGGTA TAGAAATTAA
  W
  TAGCTTGTGG AATAGTGTTC TGTTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44946985	mCV23845287	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss148476954	ENSMUSSNP5943266	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		T
ss319612498	CHEV_1_4798422	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30608400					SNP	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4878564 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9	CpG island 9	47 bp distal
Gm37988	predicted gene, 37988	within coordinates
Gm70766	predicted gene, 70766	611 bp upstream
Lypla1	lysophospholipase 1	within coordinates
Rr407434	regulatory region 407434	622 bp distal
Rr407435	regulatory region 407435	420 bp distal
Rr407436	regulatory region 407436	225 bp distal
Rr407437	regulatory region 407437	1988 bp proximal
Tssr5801	transcription start site region 5801	669 bp downstream
Tssr5802	transcription start site region 5802	413 bp downstream
Tssr5803	transcription start site region 5803	54 bp downstream
Tssr10888	transcription start site region 10888	639 bp upstream
Tssr10889	transcription start site region 10889	594 bp upstream