rs30609027 SNP Detail

Summary

• ID
  rs30609027
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72341065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA CACACAAAAC AAAAAGGAAA
  M
  CGAGTACCAG GACTGGGGTA TTGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45946519	mCV24086843	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					C		A
ss47978954	NES11921276	PERLEGEN	MM_PANEL2	f	SNP	C		C	A	C	C	A		A		C	A		A	A	C		A
ss133283909	ENSMUSSNP1132227	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							A
ss321821443	CHEV_6_72314076	CHEVERUD	SCREENING_POP	f	SNP													A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30609027					SNP	C	C	C	A	C	C	A	C	A	A	C	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978954	NES11921276	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72341065 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17541	CpG island 17541	1527 bp distal
Rnf181	ring finger protein 181	within coordinates
Rr368103	regulatory region 368103	1364 bp downstream
Rr632143	regulatory region 632143	1160 bp distal
Rr632144	regulatory region 632144	1268 bp distal
Rr632145	regulatory region 632145	1243 bp distal
Rr632146	regulatory region 632146	115 bp proximal
Rr632147	regulatory region 632147	651 bp proximal
Rr632148	regulatory region 632148	809 bp proximal
Rr632149	regulatory region 632149	1045 bp proximal
Tssr61441	transcription start site region 61441	1703 bp upstream
Tssr61442	transcription start site region 61442	1665 bp upstream