rs30609318 SNP Detail

Summary

• ID
  rs30609318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:39302885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGG CCAGGTCTAG AGCACCAATT
  Y
  CTGCAGTAGC ATACATTAGA TATGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss44945703	mCV24532900	ABI	CRAMUS_MOUSE	f	SNP	C	T		C		T
ss60312163	NES15803721	PERLEGEN	MM_PANEL2	f	SNP			C		C			C	T	C
ss146374618	ENSMUSSNP936929	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				T
ss325804092	CHEV_19_39388931	CHEVERUD	SCREENING_POP	f	SNP							T				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs30609318					SNP	C	T	C	C	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312163	NES15803721	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:39302885 () rs orientation: forward

Symbol	Name	Function Class
Cyp2c29	cytochrome P450, family 2, subfamily c, polypeptide 29	within coordinates
Tssr156337	transcription start site region 156337	1039 bp upstream
Tssr156338	transcription start site region 156338	1073 bp upstream
Tssr156339	transcription start site region 156339	1098 bp upstream
Tssr156340	transcription start site region 156340	1198 bp upstream
Tssr156341	transcription start site region 156341	1247 bp upstream