rs30609551 SNP Detail

Summary

• ID
  rs30609551
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3028076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GATTTTCAGT TTTCTTGCCA TATTCCATGT CCCACAGTGG ACATTTCTAA GTTTTCCACC
  TTTTTCAGTT TTCCTCGACA TATTTCGTGT CCTAAAGTTT GTATTTCTCA TTTTCCGTTA
  TTTTCAGTTT TCTTGCCATA TTCCAGGTCT TATAGTGTGC ATTTTTCATT TTTCACGTTT
  TTTAGTGATT TCGTAATTTT TCAAGTCGTC AAGTGGATGT TTCTCATTTT CCATGATTTT
  CAGTTTTCTT GCCATATTCC ATGTCCCACA GTGGACATTT CTAAATTTTC CACCTTTTCA
  K
  TTTTCCTTGC CATATTTCAT GTCCTAAAGT TTGTGTTTCT CATTTTCCAT GATTTTCAGT
  TTTCTTTCCA TATTCCAGGT CCTACAGTGT GCATTTCTCA TTTTTCATGT TTTTCAGTAA
  TTTAGTCATA TTTCAAGTCA TGAAGTAGAT GTTTCTCATT TTCCATGATT TTCAGTTTTC
  TTCTTATATT CCATGTCCCA CAGTGGACTT TTCTAAATTT TCCACCTTTT TCTGTTTTCC
  TCGCAATATG TCACGTCATA AAGTGTGTAT TTCTCATTTT CCGTGATTTT CAGTTTTCTC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46424996	mCV25362522	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30609551					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3028076 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21324	CpG island 21324	896 bp distal
Cpgi21325	CpG island 21325	1311 bp proximal
Rr673606	regulatory region 673606	1546 bp distal
Rr673607	regulatory region 673607	1066 bp distal
Rr673608	regulatory region 673608	416 bp distal
Rr673609	regulatory region 673609	within coordinates
Rr673610	regulatory region 673610	805 bp proximal
Tssr83582	transcription start site region 83582	1581 bp downstream
Tssr83583	transcription start site region 83583	1394 bp downstream
Tssr83584	transcription start site region 83584	1307 bp downstream
Tssr83585	transcription start site region 83585	931 bp downstream
Tssr83586	transcription start site region 83586	608 bp downstream
Tssr83587	transcription start site region 83587	301 bp downstream
Tssr83588	transcription start site region 83588	1295 bp upstream
Tssr83589	transcription start site region 83589	1579 bp upstream
Tssr88019	transcription start site region 88019	1356 bp upstream
Tssr88020	transcription start site region 88020	1288 bp upstream
Tssr88021	transcription start site region 88021	664 bp upstream
Tssr88022	transcription start site region 88022	588 bp upstream
Tssr88023	transcription start site region 88023	1326 bp downstream