rs30609663 SNP Detail

Summary

• ID
  rs30609663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95997964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC CAACTTACCA TCAATGCAAC
  Y
  GTTTAGCTAA TGTTACAGAA ATGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45447772	mCV22910506	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss46779557	NES10726464	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C	T		C	C	T	T		T	C	T	T		T
ss135513802	ENSMUSSNP4085423	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss320841440	CHEV_3_95894575	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30609663					SNP	T	T	C	C	C	T	C	C	C	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779557	NES10726464	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95997964 () rs orientation: forward

Symbol	Name	Function Class
Rr397849	regulatory region 397849	167 bp downstream
Rr581142	regulatory region 581142	249 bp distal
Rr581143	regulatory region 581143	373 bp distal
Rr581144	regulatory region 581144	75 bp proximal
Rr581145	regulatory region 581145	679 bp proximal